Field note · September 21, 2023

What adverse_event actually contains in clinical-trial

900 rows, 4 distinct values, and the one fact about adverse_event that changes how you query it.

1 min read ·Data quality ·quality practice

Working through clinical-trial again. adverse_event is the column people trip over, so here is what it actually looks like.

900 rows, no nulls, 4 distinct values. none, mild, moderate, or severe.

4 values, and they are not evenly spread: none 64.8%, mild 23.4%, moderate 9.6%, severe 2.2%. The largest takes 64.8% on its own.

Read the distinct list rather than the distinct count. Casing differences and trailing whitespace produce values that look identical in a report and group separately in SQL, and the count will not show you that — select distinct adverse_event order by 1 will, in about a second.

sql
select
  count(*)                        as rows,
  count(adverse_event)            as present,
  count(*) - count(adverse_event) as nulls,
  count(distinct adverse_event)   as distinct_values
from clinical_trial;

Low cardinality, stable values — this is a column you can group by without thinking about it, and a reasonable candidate for a chart facet. Check the distinct list, not just the count, because a stray casing variant hides in the count and shows up in the group-by.

Where this bites: a group-by on this column produces 4 rows today. If it is a column an upstream system can add values to, it produces an unknown number tomorrow, and any dashboard laid out for 4 categories reflows without warning. Values arriving is a schema change that no schema check catches.

The grain is one row per enrolled subject, which is the context every one of those numbers depends on. None of them survive a change of grain, which is why "profile the column" and "profile the table" are the same job. Full schema, and the CSV, on the dataset page.